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@vgvassilev vgvassilev force-pushed the master branch 3 times, most recently from b95e694 to f5c9ae6 Compare August 21, 2025 10:51
@vgvassilev vgvassilev force-pushed the ci-salva branch 2 times, most recently from 4e74fdb to 4d1f1c5 Compare August 21, 2025 11:10
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salva24 and others added 4 commits August 22, 2025 09:11
* all work I have done untill the midterm: tumor replicated from the nature paper including forces and diffusion modules

* car-t oxygen consumption

* Update README.md

Co-authored-by: Vassil Vassilev <[email protected]>

* Update src/cart_cell.cc

Co-authored-by: Vassil Vassilev <[email protected]>

* still in progress CAR-T displacement

* cleaned comments to follow Doxygen-style

* changed comments to follow doxygen-style

* Remove draft_code_my_own_analysis/ from tracking and add to .gitignore

* remove draft_code_my_own_analysis

* add to gitignore draft_code_my_own_analysis

* fixing comments

* [ci] Add basic github actions infrastructure

* Update CMakeLists.txt

Co-authored-by: Vassil Vassilev <[email protected]>

* Update README.md

Co-authored-by: Vassil Vassilev <[email protected]>

* Update README.md

Co-authored-by: Vassil Vassilev <[email protected]>

* Update src/cart_cell.cc

use *Simulation::GetActive()->GetResourceManager() just once

Co-authored-by: Vassil Vassilev <[email protected]>

* Update src/cart_cell.cc

Co-authored-by: Vassil Vassilev <[email protected]>

* Update src/forces_tumor_cart.cc

Co-authored-by: Vassil Vassilev <[email protected]>

* changed some things to imporve code quality

* cart_cell comments fixed

* changed all comments to /// in the .h and changed some of them

* changed the project name + new readme part Results

* minor change spelling

* 30-days simulation

---------

Co-authored-by: Vassil Vassilev <[email protected]>
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Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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}

InteractionForce* InteractionVelocity::NewCopy() const {
return std::make_unique<InteractionVelocity>().release();

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warning: no header providing "std::make_unique" is directly included [misc-include-cleaner]

src/forces_tumor_cart.cc:23:

+ #include <memory>

*/

#ifndef TUMOR_HYPERPARAMS_H_
#define TUMOR_HYPERPARAMS_H_

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warning: header guard does not follow preferred style [llvm-header-guard]

Suggested change
#define TUMOR_HYPERPARAMS_H_
#ifndef GITHUB_WORKSPACE_SRC_HYPERPARAMS_H
#define GITHUB_WORKSPACE_SRC_HYPERPARAMS_H

src/hyperparams.h:244:

+ endif // GITHUB_WORKSPACE_SRC_HYPERPARAMS_H

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